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x11-wm/awesome

A dynamic floating and tiling window manager

sys-power/nut

Network-UPS Tools

app-portage/udept

A Portage analysis toolkit

app-portage/herdstat

A multi-purpose query tool capable of things such as displaying herd/developer information and displaying category/package metadata

dev-lang/ghc

The Glasgow Haskell Compiler

dev-haskell/cabal-install

The command-line interface for Cabal and Hackage.

www-client/pybugz

Command line interface to (Gentoo) Bugzilla

app-admin/reprepro

Debian repository creator and maintainer application

media-sound/ncmpcpp

An ncurses mpd client, ncmpc clone with some new features, written in C++

media-sound/mpc

A commandline client for Music Player Daemon (media-sound/mpd)

app-office/openoffice

OpenOffice.org, a full office productivity suite.

dev-ruby/rake

Make-like scripting in Ruby

sys-kernel/genkernel

Gentoo automatic kernel building scripts

gnome-base/gvfs

GNOME Virtual Filesystem Layer

app-admin/equo

Official Sabayon Linux Package Manager Client

sci-chemistry/gromacs

The ultimate molecular dynamics simulation package

dev-python/django

high-level python web framework

dev-python/django-svn

high-level python web framework

dev-util/stgit

Manage a stack of patches using GIT as a backend

dev-util/bakefile

Native makefiles generator

dev-libs/dbus-glib

D-Bus bindings for glib

sys-auth/policykit

Policy framework for controlling privileges for system-wide services

sys-cluster/drbd

mirror/replicate block-devices across a network-connection

sys-cluster/util-vserver

Linux-VServer admin utilities

dev-util/topgit

TopGit - A different patch queue manager

app-admin/eselect

Modular -config replacement utility

dev-util/monotone

Monotone Distributed Version Control System

sys-apps/devicekit-disks

Daemon providing interfaces to work with storage devices

sys-apps/etckeeper

Etckeeper is a collection of tools to let /etc be stored in a git, mercurial, or bzr repository.

app-paludis/plop

A nice paludis.log parser (patched genlop)

dev-lang/R

Language and environment for statistical computing and graphics

dev-util/quilt

quilt patch manager

dev-util/source-highlight

Generate highlighted source code as an (x)html document

dev-util/mercurial

Scalable distributed SCM

www-client/surfraw

A fast unix command line interface to WWW

sci-visualization/epix

2- and 3-D plotter for creating images (to be used in LaTeX)

www-apps/nanoblogger

Small and simple weblog engine written in Bash for the command-line

app-emulation/ganeti

Ganeti is a virtual server management software tool

media-gfx/scrot

Screen capture utility using imlib2 library

net-misc/bti

A command line twitter/identi.ca client

app-text/glark

File searcher similar to grep but with fancy output

app-text/calibre

Ebook management application.

app-text/tree

Lists directories recursively, and produces an indented listing of files.

gnome-extra/gdesklets-core

GNOME Desktop Applets: Core library for desktop applets

app-forensics/rkhunter

Rootkit Hunter scans for known and unknown rootkits, backdoors, and sniffers.

app-portage/genlop

A nice emerge.log parser

media-sound/moosic

Moosic is a music player that focuses on easy playlist management

app-crypt/shash

Generate or check digests or MACs of files

app-benchmarks/siege

A HTTP regression testing and benchmarking utility

dev-tex/latexmk

Perl script for automatically building LaTeX documents.