Search: gentoo-sources

sci-libs/spqr

Multithreaded multifrontal sparse QR factorization library

sci-libs/arprec

Arbitrary precision float arithmetics and functions

sci-libs/metis

A package for unstructured serial graph partitioning

sci-libs/parmetis

Parallel (MPI) unstructured graph partitioning library

sci-libs/umfpack

Unsymmetric multifrontal sparse LU factorization library

kde-misc/kshutdown

Shutdown manager for desktop environments like KDE Plasma

sys-apps/dtc

Open Firmware device tree compiler

sys-apps/conspy

Remote control for Linux virtual consoles

sys-apps/ipmitool

Utility for controlling IPMI enabled devices

sys-apps/help2man

GNU utility to convert program --help output to a man page

sys-apps/prctl

Tool to query and modify process behavior

sys-apps/dstat

Versatile replacement for vmstat, iostat and ifstat

sys-apps/ucspi-tcp

Collection of tools for managing UNIX services

sys-apps/dnotify

Execute a command when the contents of a directory change

sys-apps/renameutils

Use your favorite text editor to rename files

sys-apps/dchroot

Utility for managing chroots for non-root users

sys-apps/diffutils

Tools to make diffs and compare files

sys-apps/rng-tools

Daemon to use hardware random number generators

sys-apps/byld

Build a Linux distribution on a single floppy

sys-apps/servicelog

Provides utilities for logging service-related events

sys-cluster/ipvsadm

utility to administer the IP virtual server services

sys-cluster/pconsole

Tool for managing multiple xterms simultaneously

games-strategy/darwinia

A digital dreamscape simulation game

games-strategy/dopewars

Re-Write of the game Drug Wars

games-strategy/wargus

Warcraft II for the Stratagus game engine

www-misc/multisort

Merges httpd logfiles in the Common Log Format

sys-process/daemontools

Collection of tools for managing UNIX services

sys-process/latencytop

Tool for identifying where in the system latency is happening

sys-process/runit

A UNIX init scheme with service supervision

sci-biology/sibsim4

A rewrite and improvement upon sim4, a DNA-mRNA aligner

sci-biology/phyml

Estimation of large phylogenies by maximum likelihood

sci-biology/aaindex

Amino acid indices and similarity matrices

sci-biology/cutg

Codon usage tables calculated from GenBank

sci-biology/bioperl-run

Perl wrapper modules for key bioinformatics applications

sci-biology/biosql

A generic bioinformatics relational database model

sci-biology/mafft

Multiple sequence alignments using a variety of algorithms

sci-biology/maq

Mapping and Assembly with Qualities, mapping NGS reads to reference genomes

sci-biology/glimmerhmm

A eukaryotic gene finding system from TIGR

sci-biology/kalign

Global and progressive multiple sequence alignment

sci-biology/bioperl

Perl tools for bioinformatics - Core modules

sci-biology/seaview

A graphical multiple sequence alignment editor

sci-biology/exonerate

Generic tool for pairwise sequence comparison

app-dicts/libydpdict

Library for handling the Collins Dictionary database

dev-perl/Carp-Always

Warns and dies noisily with stack backtraces

dev-perl/IO-TieCombine

produce tied (and other) separate but combined variables

dev-perl/Config-MVP

Multivalue-property package-oriented configuration

dev-perl/Pod-Eventual

read a POD document as a series of trivial events

app-text/mupdf

A lightweight PDF viewer and toolkit written in portable C

dev-util/amtterm

A nice tool to manage amt-enabled machines

sci-libs/scotch

Software for graph, mesh and hypergraph partitioning