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sys-apps/ifplugd

Brings up/down ethernet ports automatically with cable detection

sys-apps/dstat

Versatile replacement for vmstat, iostat and ifstat

sys-apps/moreutils

Collection of tools that nobody thought to write when Unix was young

sys-apps/bar

Console Progress Bar

sys-cluster/torque

Resource manager and queuing system based on OpenPBS

games-strategy/wesnoth

Battle for Wesnoth - A fantasy turn-based strategy game

games-strategy/freecol

An open source clone of the game Colonization

games-strategy/dominions2

Dominions 2: The Ascension Wars is an epic turn-based fantasy strategy game

sci-chemistry/moldy

Molecular dynamics simulations platform

sci-chemistry/gelemental

Periodic table viewer with detailed information on the chemical elements

sci-chemistry/mpqc

The Massively Parallel Quantum Chemistry Program

sys-process/supervise-scripts

Starting and stopping daemontools managed services

sci-biology/mummer

A rapid whole genome aligner

sci-biology/wise

Intelligent algorithms for DNA searches

sci-biology/velvet

A sequence assembler for very short reads

sci-biology/augustus

Eukaryotic gene predictor

sci-biology/iqpnni

Important Quartet Puzzling and NNI Operation

games-puzzle/sgt-puzzles

Simon Tatham's Portable Puzzle Collection

dev-python/mpi4py

Message Passing Interface for Python

app-editors/diakonos

A Linux editor for the masses

dev-python/Whoosh

Fast, pure-Python full text indexing, search and spell checking library

sci-libs/scotch

Software for graph, mesh and hypergraph partitioning

sci-mathematics/normaliz

Tool for computations in affine monoids and more

dev-haskell/chasingbottoms

For testing partial and infinite values

dev-haskell/monoid-transformer

Monoid counterparts to some ubiquitous monad transformers

xfce-base/libxfce4ui

Unified widget and session management libs for Xfce

dev-haskell/cmdargs

Command line argument processing

dev-haskell/smallcheck

A property-based testing library

dev-haskell/statistics

A library of statistical types, data, and functions

dev-haskell/erf

The error function, erf, and related functions

sci-mathematics/topcom

Computing Triangulations Of Point Configurations and Oriented Matroids

dev-libs/libunistring

Library for manipulating Unicode and C strings according to Unicode standard

dev-scheme/jscheme

A Scheme dialect with a simple Java interface called Javadot notation

media-libs/libmpdclient

A C library which implements the Music Player Daemon protocol

xfce-base/garcon

Xfce's freedesktop.org specification compatible menu implementation library

x11-libs/libvdpau

VDPAU wrapper and trace libraries

dev-python/cvxopt

Python package for convex optimization

dev-python/gevent

Python networking library that uses greenlet to provide synchronous API

dev-util/perf

Userland tools for Linux Performance Counters

sci-mathematics/gfan

Compute Groebner fans and tropical varieties

media-libs/volpack

Volume rendering library

dev-python/django-extensions

A collection of custom extensions for the Django Framework

sci-mathematics/frobby

Software system and project for computations with monomial ideals

dev-ruby/hashie

Hashie is a small collection of tools that make hashes more powerful

sci-libs/oc

Network Data Access Protocol client C library

dev-ruby/acts_as_list

Capabilities for sorting and reordering a number of objects in a list

dev-ruby/rdoc

An extended version of the RDoc library from Ruby 1.8

dev-ruby/will_paginate

Most awesome pagination solution for Ruby

dev-ruby/minitest

minitest/unit is a small and fast replacement for ruby's huge and slow test/unit

dev-util/cucumber-rails

Executable feature scenarios for Rails