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dev-python/pyBigWig

quick access to and creation of bigWig files

dev-python/pyaml-env

Parse YAML configuration with environment variables in Python

dev-python/pybedtools

Use BED and GFF files from python using BEDtools

dev-python/pyct

Python packaging Common Tasks

dev-python/pyfaidx

Efficient pythonic random access to fasta subsequences

dev-python/pynndescent

Fast approximate nearest-neighbour search via Nearest-Neighbour Descent

dev-python/pynwb

A Python API for working with Neurodata stored in the NWB Format

dev-python/pysolar

Collection of Python libraries for simulating the irradiation by the sun

dev-python/python-gantt

Draw Gantt charts from Python

dev-python/pyviz_comms

Bidirectional communication for the HoloViz ecosystem

dev-python/pyvote

Estimate the probability of votes changing election outcomes

dev-python/reretry

An easy-to-use but functional retry decorator in python

dev-python/pyzo

The Python IDE for scientific computing

dev-python/ripser

python frontend for the fast ripser tda tool

dev-python/snakemake

Make-like task language

dev-python/snakemake-interface-common

Common functions and classes for Snakemake and its plugins

dev-python/snakemake-interface-executor-plugins

Stable interface for interactions between Snakemake and its executor plugins

dev-python/snakemake-interface-logger-plugins

Snakemake Logger Plugin Interface

dev-python/snakemake-interface-report-plugins

The interface for Snakemake report plugins

dev-python/snakemake-interface-storage-plugins

Stable interface for interactions between Snakemake and its storage plugins

dev-python/spectra

Easy color scales and color conversion for Python

dev-python/spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

dev-python/stopit

Timeout control decorator and context managers

dev-python/tex2pix

Lightweight renderer of LaTeX to a variety of graphics formats

dev-python/texext

Sphinx extensions for working with LaTeX math

dev-python/transforms3d

Code to convert between various geometric transformations

dev-python/throttler

Easy throttling with asyncio support

dev-python/uhi

Universal Histogram Interface

dev-python/umap-learn

Uniform Manifold Approximation and Projection: fast non-linear dimension reduction

dev-python/visvis

An object oriented approach to visualization of 1D to 4D data

dev-python/wirerope

A wrapper interface for python callables

dev-python/wraps

Meaningful and safe wrapping types.

dev-python/xopen

Open compressed files transparently

dev-python/yte

A YAML template engine with Python expressions

dev-python/zarr_checksum

Calculatine zarr checksums from local or cloud storage

dev-util/ndiff

A diff program that ignores small numeric differences

dev-util/plog

Portable, simple and extensible C++ logging library

dev-util/f90cache

Compiler cache for fortran

dev-util/makefile2graph

Create a graph of dependencies from GNU Make

dev-util/mad-numdiff

compare unformatted text files with numerical content

dev-vcs/dandi-cli

DANDI command line client to facilitate common operations

dev-vcs/datalad

Keep code, data, containers under control with git and git-annex

dev-vcs/datalad-fuse

Keep code, data, containers under control with git and git-annex

media-libs/embree-bin

high-performance ray tracing kernels from intel

media-libs/libgfx

Simplify the creation of computer graphics software

media-libs/scifio-jai-imageio

SCIFIO version of the Java Advanced Imaging Image I/O Tools API Core.

media-libs/imglib2

A multidimensional, type-agnostic image processing library.

media-libs/glbinding

Cross-platform C++ binding for the OpenGL API

media-libs/mmg

bidimensional and tridimensional remesher

media-gfx/brlcad

Constructive solid geometry modeling system