Search: gentoo-sources

sci-biology/bowtie

Popular short read aligner for Next-generation sequencing data

sci-biology/fasttree

Fast inference of approximately-maximum-likelihood phylogenetic trees

sci-chemistry/xds-bin

Software for processing single-crystal X-ray monochromatic diffraction data

sci-chemistry/autodock_vina

Program for drug discovery, molecular docking and virtual screening

sci-chemistry/gelemental

Periodic table viewer with detailed information on the chemical elements

sci-chemistry/raster3d

Generation high quality raster images of proteins or other molecules

sci-chemistry/MDAnalysis

A python library to analyze and manipulate molecular dynamics trajectories

sci-chemistry/mdtraj

Read, write and analyze MD trajectories with only a few lines of Python code

sci-electronics/fasthenry

Three dimensional inductance computation program, Whiteley Research version

sci-electronics/ghdl

Open-source analyzer, compiler, and simulator for VHDL 2008/93/87

sci-electronics/gtkwave

Wave viewer for LXT, LXT2, VZT, GHW and standard Verilog VCD/EVCD files

sci-electronics/systemc

A C++ based modeling platform for VLSI and system-level co-design

sci-geosciences/gshhg-gmt

Global Self-consistent, Hierarchical, High-resolution Geography Database

sci-geosciences/gpscorrelate

Tool for adjusting EXIF tags of your photos with a recorded GPS trace

sci-geosciences/foxtrotgps

Easy to use, fast and lightweight mapping application (fork of tangogps)

sci-geosciences/gshhs

Global Self-consistent, Hierarchical, High-resolution Shoreline programs

sci-geosciences/osmctools

A few really fast tools to convert, filter and update OSM data files

sci-libs/aotriton-bin

Ahead of Time (AOT) Triton Math Library (binary package)

sci-libs/ccolamd

Constrained Column approximate minimum degree ordering algorithm

sci-libs/camd

Library to order a sparse matrix prior to Cholesky factorization

sci-libs/cgcode

Conjugate gradient Codes for large sparse linear systems

sci-libs/ipopt

Interior-Point Optimizer for large-scale nonlinear optimization

sci-libs/libint

Matrix elements (integrals) evaluation over Cartesian Gaussian functions

sci-libs/linbox

C++ template library for integer and finite-field linear algebra

sci-libs/mumps

MUltifrontal Massively Parallel sparse direct matrix Solver

sci-libs/openlibm

High quality system independent, open source libm

sci-libs/qfits

ESO stand-alone C library offering easy access to FITS files

sci-libs/dealii

Solving partial differential equations with the finite element method

sci-libs/flexiblas

A BLAS and LAPACK wrapper library with runtime exchangable backends

sci-libs/lemon

C++ template static library of common data structures and algorithms

sci-libs/libecpint

Efficient evaluation of integrals over ab initio effective core potentials

sci-libs/lmfit

library for Levenberg-Marquardt least-squares minimization and curve fitting

sci-libs/netcdf

Scientific library and interface for array oriented data access

sci-libs/opencascade

Development platform for CAD/CAE, 3D surface/solid modeling and data exchange

sci-libs/rocPRIM

HIP parallel primitives for developing performant GPU-accelerated code on ROCm

sci-libs/rtabmap

Real-Time Appearance-Based Mapping (RGB-D Graph SLAM)

sci-mathematics/cubicle

Model checker for verifying properties of array-based systems

sci-mathematics/eprover

Automated theorem prover for full first-order logic with equality

sci-mathematics/msieve

A C library implementing a suite of algorithms to factor large integers

sci-mathematics/nestedsums

A GiNaC-based library for symbolic expansion of certain transcendental functions

sci-mathematics/cvc4

Automatic theorem prover for satisfiability modulo theories (SMT) problems

sci-mathematics/dunshire

Python library to solve linear games over symmetric cones

sci-mathematics/highs

Modern solver for linear, quadratic, and mixed-integer programs

sci-visualization/fityk

General-purpose nonlinear curve fitting and data analysis

sys-apps/biosdisk

FreeDOS based BIOS updating utility for Dell machines

sys-apps/iucode_tool

tool to manipulate Intel X86 and X86-64 processor microcode update collections

sys-apps/hprofile

Utility to manage hardware, network, power or other profiles (fork)

sys-apps/cciss_vol_status

Shows status of logical drives attached to HP SmartArray controllers

sys-apps/ethtool

Utility for examining and tuning ethernet-based network interfaces

sys-apps/ugrep

A more powerful, ultra fast, user-friendly, compatible grep