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dev-perl/Config-Std
Load and save configuration files in a standard format
sci-biology/gffcompare
Compare, classify, merge, track, annotate GFF files
sci-biology/irsabi_bidsdata
BIDS data files released with the IRSABI publication
sci-biology/fastqc
Quality control FASTA/FASTQ sequence files
sci-biology/sff_dump
Convert Roche SFF files to FASTA file format
sci-biology/Fastaq
Manipulate FASTA/Q, GFF3, EMBL, GBK files with API for developers
sci-biology/bam-readcount
Count DNA sequence reads in BAM files and other statistics calculations
sci-mathematics/pulp
Create MPS/LP files, call solvers, and present results
app-misc/gohan
Commandline application, written in Go, to install configuration files
sci-libs/pycifrw
Reading and writing CIF (Crystallographic Information Format) files
app-cdr/cdirip
Converts DiscJuggler CDI files to various disc image formats.
app-misc/pyrescene
Mechanism to restore metadata from certain releasesd files.
media-gfx/pngdefry
Convert iOS and macOS compressed PNG files to normal.
sci-libs/readstat
library for converting SAS, Stata, and SPSS files
media-video/hdr10plus_tool
CLI utility to work with HDR10+ in HEVC files.
dev-python/renderspec
Jinja2 template renderer for generating .spec files
dev-python/robotsparser
Parse robots.txt files and find indexed urls
dev-python/sblu
Library for munging data files from ClusPro/FTMap/etc.
dev-python/screener
Check e-book files for security and privacy issues.
dev-python/sfcparse
The easy to use library for your data, configuration, and save files
dev-python/shiny-mdc
Tool to compile markdown files to tex/pdf using pandoc, latexmk
dev-python/tkvideoplayer
This library helps you play video files in tkinter
dev-python/unrpa
Extract files from the RPA archive format (from the Ren'Py Visual Novel Engine).
dev-python/wadllib
Navigate HTTP resources using WADL files as guides.
dev-python/ogr2osm
A tool for converting ogr-readable files like shapefiles into .osm or .pbf data
dev-python/ExifReader
Read Exif metadata from tiff and jpeg files.
dev-python/FastTelethonhelper
Make Telethon files upload/download faster
dev-python/aghplctools
Interaction package for Agilent ChemStation report files
dev-php/PHP_CodeSniffer
Tokenizes PHP files and detects violations of a defined set of coding standards.
dev-python/glyphsLib
A library to provide a bridge from Glyphs source files to UFOs
dev-python/statmake
Generate STAT tables for variable fonts from .stylespace files
sci-libs/metaio
A library for parsing LIGO/Virgo LIGO_LW Table files
sys-apps/hardenedtmpfiles
A standalone utility to process systemd-style tmpfiles.d files
dev-libs/mxml
A small XML parsing library that you can use to read XML data files or strings
app-misc/mvcommon-bin
Tool for moving files into a folder where they have a common prefix
sci-biology/plamri_brudata
Bruker ParaVision data files for testing the PlaMRI package
media-video/mxflib
A multi-platform C++ library for reading and writing MXF files
net-misc/nncp
Utilities for securely store-and-forwarding files, mail and commands
app-admin/lib_users
Check for mapped libs and open files that are marked as deleted
app-arch/duff
Command-line utility for quickly finding duplicates in a given set of files
app-crypt/sbsigntools
Utilities for signing and verifying files for UEFI Secure Boot
app-crypt/minisign
Dead simple tool to sign files and verify signatures
app-editors/wxhexeditor
A cross-platform hex editor designed specially for large files
app-forensics/foremost
Console program to recover files based on their headers and footers
app-misc/unfoo
Simple bash driven frontend to simplify decompression of files
app-misc/jail
Builds a chroot and configures all the required files, directories and libraries
app-misc/binwalk
A tool for identifying files embedded inside firmware images
app-office/mdbtools
Set of libraries and utilities for reading Microsoft Access database (MDB) files
app-text/tofrodos
Utility that converts ASCII files between the MSDOS and the Unix format
app-text/tree
Lists directories recursively, and produces an indented listing of files