# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="A unified Python toolkit for biological data harmonization and ontology mapping"

HOMEPAGE="https://github.com/arpanauts/biomapper"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE=""
DEPENDENCIES="<dev-python/requests-3.0.0[${PYTHON_USEDEP}]
	>=dev-python/numpy-2.1.0[${PYTHON_USEDEP}]
	<dev-python/pandas-3.0.0[${PYTHON_USEDEP}]
	<dev-python/sqlalchemy-2.0.0[${PYTHON_USEDEP}]
	<dev-python/pyyaml-7.0.0[${PYTHON_USEDEP}]
	<dev-python/tqdm-5.0.0[${PYTHON_USEDEP}]
	dev-python/libChEBIpy[${PYTHON_USEDEP}]
	<dev-python/matplotlib-4.0.0[${PYTHON_USEDEP}]
	<dev-python/seaborn-0.14.0[${PYTHON_USEDEP}]
	dev-python/UpSetPlot[${PYTHON_USEDEP}]
	dev-python/venn[${PYTHON_USEDEP}]
	dev-python/langfuse[${PYTHON_USEDEP}]
	dev-python/openai[${PYTHON_USEDEP}]
	<dev-python/python-dotenv-2.0.0[${PYTHON_USEDEP}]
	dev-python/dspy-ai[${PYTHON_USEDEP}]
	<dev-python/cloudpickle-4.0.0[${PYTHON_USEDEP}]
	<dev-python/python-multipart-0.0.11[${PYTHON_USEDEP}]
	>=dev-python/cryptography-43.0.1[${PYTHON_USEDEP}]
	dev-python/rdkit[${PYTHON_USEDEP}]
	dev-python/chromadb[${PYTHON_USEDEP}]
	dev-python/torch[${PYTHON_USEDEP}]
	dev-python/transformers[${PYTHON_USEDEP}]
	dev-python/sentence-transformers[${PYTHON_USEDEP}]
	<dev-python/aiohttp-4.0.0[${PYTHON_USEDEP}]
	dev-python/pyArango[${PYTHON_USEDEP}]
	dev-python/fastembed[${PYTHON_USEDEP}]
	dev-python/faiss-cpu[${PYTHON_USEDEP}]
	<dev-python/lxml-6.0.0[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"