# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Topyfic is a Python package designed to identify reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data"

HOMEPAGE="https://github.com/mortazavilab/Topyfic"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/fb/64/2ddf4415d32b90f5397b71143172540acf09af3f2e52e5844d3392791cd1/topyfic-${REALVERSION}.tar.gz"
SOURCEFILE="topyfic-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE=""
DEPENDENCIES=">=dev-python/pandas-1.4.4[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.24.2[${PYTHON_USEDEP}]
	dev-python/pytest[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/setuptools[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	>=dev-python/click-8.0.4[${PYTHON_USEDEP}]
	dev-python/gseapy[${PYTHON_USEDEP}]
	>=dev-python/joblib-1.3.2[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.7.2[${PYTHON_USEDEP}]
	>=dev-python/networkx-2.8.4[${PYTHON_USEDEP}]
	>=dev-python/numpy-1.24.4[${PYTHON_USEDEP}]
	dev-python/reactome2py[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-1.3.0[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.11.2[${PYTHON_USEDEP}]
	>=dev-python/seaborn-0.11.2[${PYTHON_USEDEP}]
	>=dev-python/statsmodels-0.14.0[${PYTHON_USEDEP}]
	dev-python/adjustText[${PYTHON_USEDEP}]
	>=dev-python/pyyaml-6.0.1[${PYTHON_USEDEP}]
	>=dev-python/click-8.1.7[${PYTHON_USEDEP}]
	dev-python/umap[${PYTHON_USEDEP}]
	dev-python/obonet[${PYTHON_USEDEP}]
	dev-python/plotly[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"