# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Tags reads in a BAM file based on other BAM files."

HOMEPAGE="https://github.com/bardin-lab/readtagger"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="testing"
DEPENDENCIES="dev-python/bcbio-gff[${PYTHON_USEDEP}]
	dev-python/biopython[${PYTHON_USEDEP}]
	dev-python/cached-property[${PYTHON_USEDEP}]
	dev-python/click[${PYTHON_USEDEP}]
	dev-python/contextlib2[${PYTHON_USEDEP}]
	dev-python/compare-reads[${PYTHON_USEDEP}]
	dev-python/edlib[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/mappy[${PYTHON_USEDEP}]
	dev-python/multiprocessing-logging[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/pysam[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/six[${PYTHON_USEDEP}]
	testing? ( dev-python/pytest[${PYTHON_USEDEP}] )
	testing? ( dev-python/pytest-datadir[${PYTHON_USEDEP}] )
	testing? ( dev-python/tox[${PYTHON_USEDEP}] )
	testing? ( dev-python/planemo[${PYTHON_USEDEP}] )
	testing? ( dev-python/cookiecutter[${PYTHON_USEDEP}] )
	testing? ( dev-python/bumpversion[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"