# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="A toolkit for NGS analysis with Python."

HOMEPAGE="https://github.com/afrendeiro/toolkit"
LICENSE="GPL-3"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME//-/_}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME//-/_}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="docs single_cell testing"
DEPENDENCIES=">=dev-python/setuptools-scm-3.3.3[${PYTHON_USEDEP}]
	>=dev-python/numpy-1.15.0[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.0.0[${PYTHON_USEDEP}]
	dev-python/fastcluster[${PYTHON_USEDEP}]
	>=dev-python/pandas-0.25.0[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	>=dev-python/seaborn-0.10.0[${PYTHON_USEDEP}]
	dev-python/parmap[${PYTHON_USEDEP}]
	dev-python/pysam[${PYTHON_USEDEP}]
	dev-python/pybedtools[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-0.19.1[${PYTHON_USEDEP}]
	>=dev-python/statsmodels-0.8.0[${PYTHON_USEDEP}]
	>=dev-python/patsy-0.4.1[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.19.5[${PYTHON_USEDEP}]
	dev-python/peppy[${PYTHON_USEDEP}]
	dev-python/divvy[${PYTHON_USEDEP}]
	dev-python/attmap[${PYTHON_USEDEP}]
	>=dev-python/requests-2.21.0[${PYTHON_USEDEP}]
	>=dev-python/jinja2-2.10.1[${PYTHON_USEDEP}]
	>=dev-python/natsort-6.0.0[${PYTHON_USEDEP}]
	>=dev-python/joblib-0.12.5[${PYTHON_USEDEP}]
	docs? ( dev-python/sphinx[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-rtd-theme[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-issues[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-argparse[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/scanpy[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/scanorama[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/phate[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/scvelo[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/loompy[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/fbpca[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/MulticoreTSNE[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/python-igraph[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/louvain[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/leidenalg[${PYTHON_USEDEP}] )
	single_cell? ( dev-python/fa2[${PYTHON_USEDEP}] )
	testing? ( >=dev-python/pytest-4.4.0[${PYTHON_USEDEP}] )
	testing? ( >=dev-python/coverage-4.5.2[${PYTHON_USEDEP}] )
	testing? ( dev-python/pytest-cov[${PYTHON_USEDEP}] )
	testing? ( dev-python/codecov[${PYTHON_USEDEP}] )
	testing? ( dev-python/codacy-coverage[${PYTHON_USEDEP}] )
	testing? ( dev-python/pytest-xdist[${PYTHON_USEDEP}] )
	testing? ( >=dev-python/rpy2-3.2.0[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"