# Copyright 1999-2020 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=7

inherit R-packages

DESCRIPTION='Get data from NCBI Gene Expression Omnibus (GEO)'
KEYWORDS="~amd64"
SRC_URI="http://master.bioconductor.org/packages/3.9/bioc/src/contrib/GEOquery_2.52.0.tar.gz"
LICENSE='GPL-2'

IUSE="${IUSE-} r_suggests_biocgenerics r_suggests_covr r_suggests_knitr
	r_suggests_rmarkdown r_suggests_testthat"
R_SUGGESTS="
	r_suggests_biocgenerics? ( sci-BIOC/BiocGenerics )
	r_suggests_covr? ( sci-CRAN/covr )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_testthat? ( sci-CRAN/testthat )
"
DEPEND=">=sci-CRAN/readr-1.3.1
	sci-BIOC/limma
	sci-BIOC/Biobase
	sci-CRAN/httr
	sci-CRAN/xml2
	sci-CRAN/dplyr
	sci-CRAN/tidyr
	sci-CRAN/magrittr
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"